SE2750518

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3851
  • Setaria italica
  • SE2750518
  • PIF/harbinger
  • To63
  • scaffold_3:48675106-48675480
  • TCA
  • AGGGCAGTCCCAATGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TC                --------------AA   -    ACGCGGTTTCCATAGCACAAGAAATCATCTATAAAAACTATCTTCCACAGTGGAGGTGTCTTTGAGTAATAATTATTTTCTCTTTCTCTCTCCCAACTCTATCTTCTTCCTCCAATGGGAGTGTGGCACGAGCCCCCTAGAAACGGATGGTTT
  AGGGCAGTCCCAATGG                GAA ACCG                                                                                                                                                         
  ||||||||||||||||                ||| ||||                                                                                                                                                          
  TCCCGTCAGGGTTACC                AGA AGGA                                                                                                                                                         
AC                ATATAACTACTACTAA   T    GTAATTTATTGAACGGTGTATCCGTTTTACGACTGTACCGTTGCATTAATTACTTCTTTCTCTCGTTTTTAGGATATTTACCAAAGGAGTACTTCTTTAGTCCAGAAGAGAAGTGGGTTACGTGGTTCTTTGGTACTTTAGCGGTAACCCCTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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