SE2750521

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3854
  • Setaria italica
  • SE2750521
  • PIF/harbinger
  • To36
  • scaffold_3:3419637-3420038
  • TTA
  • AGGTCCTGTTTGATAC

Secondary structure and sequence

TSD    TIR
5'



3'
TT     C      -    AAAC     -      -      G  -     G        CCT ---- AATTGCTAGTCCTAAAGTTTAGTAAAGGGCTGTTTGGATGGACTACTAATCTTTAGGACCTTAAAGGAAAAATGTCATTTTTACCCCCCAATTACTCCTCTAAACTACCCCTGAATTGTTCACGTCATTAATGCATGCGA
  AGGTC TGTTTG ATAC    TCCTA AAGATT AGTAGT TA CTAAA TTTAGGAT   C    A                                                                                                                                            
  ||||| |||||| ||||    ||||| |||||| |||||| || ||||| ||||||||   |    |                                                                                                                                            G
  TTCGG ACAAAC TATG    TGGGA GATTTC AATCTT CA GTGAA AATCCTGT   G    C                                                                                                                                            
AT     A      C    ----     A      T      -  G     -        --- AAAT CTGAACACGTAGGTTTGTACCCAGGATTTTCACGTGAAGATTTGAAATCCTCCCGGTAAAAGTGATCCTCCCGGTTCCCCATGATTACCTAGTATAAAGAGGATTTTCACCAGGGGTTCAAGGGGAAATGGCGATAACGG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End