Plant MITE

SE2710526

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3859
Setaria italica
SE2710526
Tc1/Mariner
St5
scaffold_2:47212245-47212352
TA
TACTCCCTCCGTCCCAACTTACTATTCATTTTGATTTTTCTAGATACAAAAC

Secondary structure and sequence

TSD TIR

5'

3'

                 C         A     A              AAA TT
TACTCCCTCCGTCCCAA TTACTATTC TTTTG TTTTTCTAGATACA   C  
||||||||||||||||| ||||||||| ||||| ||||||||||||||   |   
ATGAGGGAGGCAGGGTT AATGATAAG AAAAC GAAAAGATCTATGT   G  
                 T         C     C              ATC TT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

SE2710526

Basic info.

Secondary structure and sequence

MITE cluster

Closed gene

>SE2710526