Plant MITE

SE2710529

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3862
Setaria italica
SE2710529
Tc1/Mariner
St15
scaffold_4:12759512-12759755
TA
TACTCCCTCCGTCCTGAAATATAAGGCATCCAAGGGTT

Secondary structure and sequence

TSD TIR

5'

3'

         C                     A      ------CAAAATTTGTCCCCA     -   GCGTCCTAGGAGTTTTTGGCAAGTACTCAATCAACGCAATTAAAAACTTGCCAAATA
TACTCCCTC GTCCTGAAATATAAGGCATCC AGGGTT                     AATAT AAG                                                         
||||||||| ||||||||||||||||||||| ||||||                     ||||| |||                                                         T
ATGAGGGAG CAGGACTTTATGTTCCGTAGG TCCTAA                     CCCGT TAC                                                         
         A                     A      AAATCCTGTCTAATTCCTCCA     T   AAAGTATATGGGAATCGATTACCATTATGTTCCGTTTAAAAGGTCAATTGTTCCCTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2710529

TACTCCCTCCGTCCTGAAATATAAGGCATCCAAGGGTTCAAAATTTGTCCCCAAATATAAGGCGTCCTAGGAGTTTTTGGCAAGTACTCAATCAACGCAATTAAAAACTTGCCAAATATTTCCCTTGTTAACTGGAAAATTTGCCTTGTATTACCATTAGCTAAGGGTATATGAAACATTTGCCCACCTCCTTAATCTGTCCTAAAAATCCTAGGATGCCTTGTATTTCAGGACAGAGGGAGTA

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