SE2720533

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3866
  • Setaria italica
  • SE2720533
  • Mutator
  • M1
  • scaffold_5:12955720-12956271
  • ATTTTTAAA
  • ATTTTTAAATGGAAAAAGTCCATTTTACTCCCTTCACCTATTTACTTTGTCCGCTTAACCCCCTGAACAAAATTTAGGCTCACTTTACTTCCCCAAACTATTTCATTTGGTACAATCTACTCCCTAATTAGATTTCTCTTTTTTGTTTCTTTGCGTACAAGTTGAGTTTTAATTTCAGATTTTGTCAGTTGA

Secondary structure and sequence

TSD    TIR
5'



3'
    TT                                                                     AG                CA                A                                        GC   CA           AAT            C   T  CTTAT     AAC   C  C         --      -        T    A   C        CATTTTAT    ---   A  TCA
ATTT  AAATGGAAAAAGTCCATTTTACTCCCTTCACCTATTTACTTTGTCCGCTTAACCCCCTGAACAAAATTT  GCTCACTTTACTTCCC  AACTATTTCATTTGGT CAATCTACTCCCTAATTAGATTTCTCTTTTTTGTTTCTTT  GTA  AGTTGAGTTTT   TTCAGATTTTGT AGT GA     AACAT   GCT TA GTTAGAAAA  ATATTA GAATTTTT CATG TTA TTTTCATA        ATAT   CTA GA   
||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||  |||||||||||   |||||||||||| ||| ||     |||||   ||| || |||||||||  |||||| |||||||| |||| ||| ||||||||        ||||   ||| ||    
TAAA  TTTACCTTTTTCAGGTAAAATGAGGGAAGTGGATAGGTGAAACAGGCGAATTGGGGGGCTTGTTTTAAA  CGAGTGAAATGAGGGG  TTGATAAAGTAAACCA GTTAGATGGGGGATTAATCTAAAGAGAAAAAATAAAGAGA  CAT  TCAACTTAAAA   AAGTTTAAAATA TCG CT     TTGTA   CGA AT CAATTTTTT  TATGAT CTTAAAAA GTAC AAT AAAAGTAT        TATA   GAT CT   
    TT                                                                     AA                AC                G                                        AA   AC           CTC            C   T  ATCTT     CTA   A  A         AA      T        -    C   -        CCAATCCT    AAT   G  TTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End