SE2750536

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3869
  • Setaria italica
  • SE2750536
  • PIF/harbinger
  • To9
  • scaffold_8:35642208-35642413
  • TAT
  • GGCCCTGTTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TAT           GATA     TTCCT   ---CA       -  TATAATCTAAGCGAAGATTTTCTCGCTTTTCGCTTCTCGTAGTTCAAATTTCTGAAGCGG
   GGCCCTGTTTG    CGCTT     AGC     CGCTTGG AT                                                            
   |||||||||||    |||||     |||     ||||||| ||                                                             
   CCGGGGCAAAC    GCGAA     TCG     TAGCCAC TT                                                            
TAT           AAAG     --TAT   TTGAA       C  TATTCGCTCTTAGGACGGTTTGCAAACGAATAAAAGTGGCTAAGAGCGACTACACCATTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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