Plant MITE

SE2750537

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3870
Setaria italica
SE2750537
PIF/harbinger
To25
scaffold_3:4426763-4427072
ATA
GGGTCTGTTTGGTAGAGCTCC

Secondary structure and sequence

TSD TIR

5'

3'

ATA    C                ATCT  TT         TATGGG          CT     AAGTGATTCTGTGGCTGAAAGTGATTCTCTTCAATTCTTTAGCATAAACTCTTAAAATCAGGATGGGGAATCACTTCACAGGATCAGGAGAAGCTA
   GGGT TGTTTGGTAGAGCTCC    GA  CTGATTCTC      AGCTGATTCT  GAGAG                                                                                                
   |||| ||||||||||||||||    ||  |||||||||      ||||||||||  |||||                                                                                                C
   CCCA GCAAACCGTCTCGAGG    CT  GACTAAGAG      TCGACTTAGG  TCGTC                                                                                                
ATA    C                --GT  -C         ------          --     CTCGAGACGGTTTGTTAAAAGGTCTCTCTTCACTAAGAGACGACTAAGACACTTCACTAAGAAACTTTACTTGATTCTCCAACCCTCGCCTTTTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2750537

ATAGGGTCTGTTTGGTAGAGCTCCATCTGATTCTGATTCTCTATGGGAGCTGATTCTCTGAGAGAAGTGATTCTGTGGCTGAAAGTGATTCTCTTCAATTCTTTAGCATAAACTCTTAAAATCAGGATGGGGAATCACTTCACAGGATCAGGAGAAGCTACTTTTTTCCGCTCCCAACCTCTTAGTTCATTTCAAAGAATCACTTCACAGAATCAGCAGAGAATCACTTCTCTCTGGAAAATTGTTTGGCAGAGCTCCTGCTGGATTCAGCTGAGAATCAGCTCTGGGAGCTCTGCCAAACGCACCCATA

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