Plant MITE

SE2730542

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3875
Setaria italica
SE2730542
hAT
Hat9
scaffold_6:25594632-25594822
ATCCCAGC
TAGGGATGCAAGTGGGT

Secondary structure and sequence

TSD TIR

5'

3'

ATCCCAGC             ------------    --AACCAATA    -TCCT   TCAGCT   T     T     C  G   ATCT    T    ATCC
        TAGGGATGCAAGT            GGGT          GTTT     GTG      GAT AATTA GATGG AT CCA    AATA ATTT    
        |||||||||||||            ||||          ||||     |||      ||| ||||| ||||| || |||    |||| ||||     
        ATCCCTACGTTCA            CCCA          TAGA     CAC      TTA TTGAT TTACT TA GGT    TTAT TAAA    
CGACCCTA             ATATATATAAAA    GCAACCCAAC    TTTTT   -CTATT   C     C     A  A   GCAT    -    ACCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2730542

ATCCCAGCTAGGGATGCAAGTGGGTAACCAATAGTTTTCCTGTGTCAGCTGATTAATTATGATGGCATGCCAATCTAATATATTTATCCTCCAAAATTATTTACGTGGAATATCATTCTAGTTCATTTTATCCACTTTTTAGATCAACCCAACGACCCAAAATATATATAACTTGCATCCCTAATCCCAGC

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