Plant MITE

SE2750547

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3880
Setaria italica
SE2750547
PIF/harbinger
To37
scaffold_9:21844999-21845514
TAT
GGGCGCGTTTGGTTCGTTGCTGAGGCT

Secondary structure and sequence

TSD TIR

5'

3'

TAT              C     - G     --A        --- GTACCTGGGAGCCAGGCCCCCGCTAGCCAGGCTCAACGAATGCAACATAAGTTTGTTTGGTTGCACGCATTAATCTGGTCAGATCGTGAATAGAAGTTGTTTGGTTGCTCGCACGAGAATATATTGCATGAGATAAAATACTACAACCAAGTATCATTATGATATTTATATTGTGTAAAATATTTTAATAGTTCTTACTTTACCTCATTAAATCT
   GGGCGCGTTTGGTT GTTGC T AGGCT   GCCTGGCT   C                                                                                                                                                                                                                       
   |||||||||||||| ||||| | |||||   ||||||||   |                                                                                                                                                                                                                        
   CCCGCGCAAACCAA CAGCG G TCCGA   GGTCCGAG   G                                                                                                                                                                                                                       
TAT              C     T G     ACA        GTC CTACGTACAACGGCAACTAACCAACGGACGCACAACCGGTCTCGGACCGAGTCGCGTACGTTTTCCGTGGCCACTCGGATCGAGGGCCCTTTGCTTTTACTTTAGGCAAAGAGCGGCCGGTCCGAGCGACCTACGTCCGTCGACGATCGATTAGTACTATAAATTATCCACTAATCGTATATAATTCACTCTAATCACAAAAAATTTTCACTAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2750547

TATGGGCGCGTTTGGTTCGTTGCTGAGGCTAGCCTGGCTCGTACCTGGGAGCCAGGCCCCCGCTAGCCAGGCTCAACGAATGCAACATAAGTTTGTTTGGTTGCACGCATTAATCTGGTCAGATCGTGAATAGAAGTTGTTTGGTTGCTCGCACGAGAATATATTGCATGAGATAAAATACTACAACCAAGTATCATTATGATATTTATATTGTGTAAAATATTTTAATAGTTCTTACTTTACCTCATTAAATCTTAATCACTTTTAAAAAACACTAATCTCACTTAATATATGCTAATCACCTATTAAATATCATGATTAGCTAGCAGCTGCCTGCATCCAGCGAGCCTGGCCGGCGAGAAACGGATTTCATTTTCGTTTCCCGGGAGCTAGGCTCACCGGTGCCTTTTGCATGCGCTGAGCCAGGCTCTGGCCAACACGCAGGCAACCAATCAACGGCAACATGCATCGCTGGAGCCTGGACAAGCCTGGTGCGACCAACCAAACGCGCCCTAT

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