Plant MITE

SE2710554

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3887
Setaria italica
SE2710554
Tc1/Mariner
St10
scaffold_4:39188059-39188319
TA
TACTCCCTCCGTCCCAAAATATAGCTACGTTTAGCTTTTTCAAAAGTCAAATCTTTTTAACTTTGAC

Secondary structure and sequence

TSD TIR

5'

3'

        C       A                 -          A                      CAACAATATCTCTAAAAA     TATTTCAAATAGAAAAGGTTACATATTATAATAGTTGGTTTC
TACTCCCT CGTCCCA AATATAGCTACGTTTAG CTTTTTCAAA GTCAAATCTTTTTAACTTTGAC                  TAATT                                          
|||||||| ||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||                  |||||                                          A
ATGAGGGA GCAGGGT TTATATCGATGCAAATC GAAAAAGTTT CAGTTTAGAAGAGTTGAAACTG                  ATTAG                                          
        A       C                 T          -                      ----ACGCTTATCTCTTT     TATCTCTGATTACTGTATTTTTATTACAATCAACTAAATAGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2710554

TACTCCCTCCGTCCCAAAATATAGCTACGTTTAGCTTTTTCAAAAGTCAAATCTTTTTAACTTTGACCAACAATATCTCTAAAAATAATTTATTTCAAATAGAAAAGGTTACATATTATAATAGTTGGTTTCATGATAAATCAACTAACATTATTTTTATGTCATTAGTCTCTATGATTATTTCTCTATTCGCAGTCAAAGTTGAGAAGATTTGACTTTGAAAAAGTCTAAACGTAGCTATATTCTGGGACGAAGGGAGTA

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