Plant MITE

SE2750557

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3890
Setaria italica
SE2750557
PIF/harbinger
To9
scaffold_7:25472487-25472693
TAA
AGGCCCCGTTTGTATCCGCTT

Secondary structure and sequence

TSD TIR

5'

3'

TA      C        C     ATAAG     T     -   AAAGAAGTGAGAATCCCGCCAAACGCTTTGCTTATTTCCACCGATTCTCGCTTATGTGGTA
  AGGCCC GTTTGTAT CGCTT     TGGCT ATCGG TGG                                                             
  |||||| |||||||| |||||     ||||| ||||| |||                                                             A
  TCTGGG CAAACATA GCGAA     ATCGG GCGAA CTA                                                             
AA      A        T     -AAGG     T     C   ATATTAGATTTGCTTCTAAAAGAGCGAAGAGCGAAGAGCATCAAGTTTAGCAACTTCGCCG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2750557

TAAGGCCCCGTTTGTATCCGCTTATAAGTGGCTTATCGGTGGAAAGAAGTGAGAATCCCGCCAAACGCTTTGCTTATTTCCACCGATTCTCGCTTATGTGGTAAGCCGCTTCAACGATTTGAACTACGAGAAGCGAGAAGCGAGAAAATCTTCGTTTAGATTATAATCCAAGCGTGGCTAGGAAAAGCGTATACAAACAGGGTCTAA

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