Plant MITE

SE2710558

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3891
Setaria italica
SE2710558
Tc1/Mariner
St19
scaffold_6:31299743-31300038
TA
TACTCCCTCCATTCTCTTTTGATAGGCCTATTT

Secondary structure and sequence

TSD TIR

5'

3'

               C                 GCAAA  -   - TTTTTCTCTTTTGATAGTCCTATTTGAGTTGCCATCTCGGGTTTGACACAGATGACTATTTGATTCTCGTGCAAAGTAACTCCTCTAGAAAAATAATTGGTGCA
TACTCCCTCCATTCT TTTTGATAGGCCTATTT     AC TAT T                                                                                                        
||||||||||||||| |||||||||||||||||     || ||| |                                                                                                        T
ATGAGGGAGGTAAGA AAAACTATCTGGATAAA     GG ATC T                                                                                                        
               A                 ---AT  T   C GTTGATGGTTCCTCTTACTTGGGATGAATAGTAGATTCCTTAGTACAATAATATATGAGTAACAATAGCATATGTACGTGGAGCCATGACTATAGAAGTATATG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2710558

TACTCCCTCCATTCTCTTTTGATAGGCCTATTTGCAAAACTATTTTTTTCTCTTTTGATAGTCCTATTTGAGTTGCCATCTCGGGTTTGACACAGATGACTATTTGATTCTCGTGCAAAGTAACTCCTCTAGAAAAATAATTGGTGCATGTATATGAAGATATCAGTACCGAGGTGCATGTATACGATAACAATGAGTATATAATAACATGATTCCTTAGATGATAAGTAGGGTTCATTCTCCTTGGTAGTTGTCCTATGGTAAAATAGGTCTATCAAAAAAGAATGGAGGGAGTA

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