SE2730565

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3898
  • Setaria italica
  • SE2730565
  • hAT
  • Hat11
  • scaffold_3:7347598-7347792
  • TATCTATA
  • ATACAGGGGCGGATCCAGGGCCCGGGCTGCCCGGGCTGCAGCCCGGGGCGAGCCCGTGTAGTCCCTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TATCT              C      CC       ---        C  --CCC  GG  A   - G  T    -     AACATAT    TGTTTAACTAAAAAA
     ATACAGGGGCGGAT CAGGGC  GGGCTGC   CCGGGCTG AG     GG  CG GCC C TG AGTC CCTTT       GTGG               
     |||||||||||||| ||||||  |||||||   |||||||| ||     ||  || ||| | || |||| |||||       ||||                
     TATGTCCCCGTCTA GTCTTG  TCCGACG   GGCCCGAT TC     CT  GT CGG G AC TCGG GGAAA       AGAG               
ATATC              T      -C       CAG        -  AACAA  AA  G   A G  -    A     -------    ATTAACTCTAGTATC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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