SE3950003

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3901
  • Vitis vinifera
  • SE3950003
  • PIF/harbinger
  • To2
  • chr18:20158208-20158333
  • TTA
  • AGAGTGTGTTTGGTAGTAATTTTAGGAAGTGTTTTTAATCTTTGTAACACTTGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
 TT                     T               ATC   G   CAC     AATTT
   AGAGTGTGTTTGGTAGTAATT TAGGAAGTGTTTTTA   TTT TAA   TTGAA     
   ||||||||||||||||||||| |||||||||||||||   ||| |||   |||||     T
   TTTCACATAAACTATCATTAA ATCCTTCACAAAAAT   AAA ATT   AACTT     
AAT                     T               CAT   A   ATA     CCTAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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