SE3950006

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3904
  • Vitis vinifera
  • SE3950006
  • PIF/harbinger
  • To3
  • chr9:129749-129873
  • TTA
  • AGAGTGCGTATGGTAGTGATTCTAGAAAGTGTTTCTAGTCTTTTTAACACTTGAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT      C  A           C   A                     C        TTTT
  AGAGTG GT TGGTAGTGATT TAG AAGTGTTTCTAGTCTTTTTAA ACTTGAAA    
  |||||| || ||||||||||| ||| ||||||||||||||||||||| ||||||||    T
  TCTCAT CA ACTGTCACTAA ATC TTCACAAAGATCAGAAAGATT TGAACTTT    
AT      A  A           A   C                     A        CTAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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