SE3950008

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3906
  • Vitis vinifera
  • SE3950008
  • PIF/harbinger
  • To4
  • chr13:22597293-22597650
  • TAA
  • AGAGTGCGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA      C  CTAAG                    T            C       --   TAAAAATTTTCAAATATTAGAAATATTAAAAGCGCTTCCTATAATCACTACCAAACAAGTTCTAAGAGTGCATTTGTAGTGATTTTAGAAAATGTTTTTAATCTTTTTAATATTCAAA
  AGAGTG GT     AGTGATTTTGGAAAGCATTT TAATATTTCTAA ACTTGAA  TGA                                                                                                                      
  |||||| ||     |||||||||||||||||||| |||||||||||| |||||||  |||                                                                                                                       
  TCTCAT CA     TCACTAAAATCTTTCGTAAA ATTATAAAGATT TGAATTT  AAA                                                                                                                      
AA      A  AACAG                    T            A       TA   AGCTCACAAATTTTATAATCTTTGCAAAGAATTTTAGTGATAGTTTATGTAAACTCAAGCAAACTATCATTAGAATCCTTTGTAAAAATTGTAAAAATTGTGAACTTTTAAAAATAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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