SE3950011

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3909
  • Vitis vinifera
  • SE3950011
  • PIF/harbinger
  • To5
  • chr1:9715801-9716027
  • TAA
  • AGGTGGTGTTTGTTTTTTGGCTGAATAGAAAAAGCCAAATATTTTGGCTTTTTCTATTCAGCTAAAAGTACCTTATTGATACTAACCAACATAATTAAAGTGAACTTATTATCAATAAGTTTAGTTTAATGATGTTGGTTGATGTCAATGAGTTACTTTTAGCTGAATAGAAAAAGCTAAAATATTTGGCTTTTTCTATTAAGCCAAAAAACAAACACAACCT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA    G                 G                                               C          C          A      G          A
  AGGT GTGTTTGTTTTTTGGCT AATAGAAAAAGCCAAATATTTTGGCTTTTTCTATTCAGCTAAAAGTA CTTATTGATA TAACCAACAT ATTAAA TGAACTTATT 
  |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||| |||||||||| T
  TCCA CACAAACAAAAAACCGA TTATCTTTTTCGGTTTATAAAATCGAAAAAGATAAGTCGATTTTCAT GAGTAACTGT GTTGGTTGTA TAATTT ATTTGAATAA 
AA    A                 A                                               T          A          G      G          C
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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