Plant MITE

SE3950013

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3911
Vitis vinifera
SE3950013
PIF/harbinger
To3
chr1:5327707-5327831
TAA
TAAGAGTTTGTTTGGGAGTGATTCTATAAAGCATTTATAACATTTTTAACACTTGAA

Secondary structure and sequence

TSD TIR

5'

3'

              GG          TA   CA   A   C        C       TGATA
TAAGAGTTTGTTTG  AGTGATTCTA  AAG  TTT TAA ATTTTTAA ACTTGAA     
||||||||||||||  ||||||||||  |||  ||| ||| |||||||| |||||||     A
ATTCTCAAGTAAAT  TCACTAAGAT  TTC  AAA ATT TAGAAATT TGAACTT     
              AA          CC   AC   A   A        A       TAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

SE3950013

Basic info.

Secondary structure and sequence

MITE cluster

Closed gene

>SE3950013