SE3950022

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3920
  • Vitis vinifera
  • SE3950022
  • PIF/harbinger
  • To5
  • chr10:8408007-8408233
  • TAA
  • AGGTGGTGTTTGTTTTTTGGCTGAATAGAAAAAGCCAAAATATTTGGCTTTTTCTATTAAGCTAAAAGTAAGTTGTTGACACCATCCAATATAGCTAAAATGAACTTGTTATCAATAGGTTCAGTTTAGTTATGTTGGATGATGTCAACATGTTACTTTTAGCTGAATAGAAAAAGCCAAATATTTTGACTTTTTCTATTAAGCCAAAAAACAAACACCACCT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                      G           C                       A            GT        C                 A          A
  AGGTGGTGTTTGTTTTTTGGCT AATAGAAAAAG CAAAATATTTGGCTTTTTCTATT AGCTAAAAGTAA  TGTTGACA CATCCAATATAGCTAAA TGAACTTGTT 
  |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||  |||||||| ||||||||||||||||| |||||||||| T
  TCCACCACAAACAAAAAACCGA TTATCTTTTTC GTTTTATAAACCGAAAAAGATAA TCGATTTTCATT  ACAACTGT GTAGGTTGTATTGATTT ACTTGGATAA 
AA                      A           A                       G            GT        A                 G          C
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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