SE3950033

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3931
  • Vitis vinifera
  • SE3950033
  • PIF/harbinger
  • To5
  • chr1:15344747-15344973
  • TTA
  • AGGTGGTGTTTGTTTTTTGGCTTAATAGAAAAAGTTAAAATATTTGACTTTTTCTATTTAGTTAAAAGTAACATGTTGACATCATTCAACATAACTAAACTGAACTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                      T                                   T            CA                C   AC    C       ATTG
  AGGTGGTGTTTGTTTTTTGGCT AATAGAAAAAGTTAAAATATTTGACTTTTTCTATT AGTTAAAAGTAA  TGTTGACATCATTCAA ATA  TAAA TGAACTT    
  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||| |||  |||| |||||||    A
  TCCACCACAAACAAAAAACCGA TTATCTTTTTTAGTTTTATAAACTGAAAAAGATAA TCGATTTTCATT  ACAACTGTAGTAGGTT TAT  ATTT ACTTGAA    
AT                      C                                   T            CA                A   CA    T       CAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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