SE3930040

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3938
  • Vitis vinifera
  • SE3930040
  • hAT
  • Hat5
  • chr11:16476945-16477474
  • GATGTGAA
  • GGGTCTCCAA

Secondary structure and sequence

TSD    TIR
5'



3' 
GATGTGAATAA          --AAA  C - C    T    T       -  CT   CCAAGCCCGCCGGGCCTAAGCCCGGCCCGAGCCTGTTTATGGGCGGGCCGGGCCACGGGCCTAAATTTAGGCCTGGAGGGCCAGCCCGGCCCGTAAGCCTGCCCCTTTAAAAAAAAACTACAAAAATAAAAAGTATTAAAAAAAATATTCAATTAATAAGCATAAAAGGAATGTAGCTCAATTGGTTAGAACCTTGAAATTTAAACATGAGG
           GGGTCTCCAA     GC C G GGCC GCTT AGGCCCG GC  GGC                                                                                                                                                                                                                    
           ||||||||||     || | | |||| |||| ||||||| ||  |||                                                                                                                                                                                                                     
           CCCAGAGGTT     CC C G CCCG GCCC GGCCCGG AT  TTA                                                                                                                                                                                                                    
AAGTGTAGATC          GCCCG  - A -    -    -       C  --   TCCTCCGGACGCCGGGTCGAGCCCGGCCCGGATACCCGGGCAACTGACCAGTTGTCCGGCCCGGTACGATTTTACGATCCGGATGCCGGGCCGGATACTCGGGCGCCCGATCGCCCGGCCGCCTGATCCGCCCGGCCCGGCCGCCCGAAAAAATTTATTCGGTTTTACCGAAAGTTTTTTCTCTTCCCTCTCCCCCCCTAAGCTTGGGGAGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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