SE3950054

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3952
  • Vitis vinifera
  • SE3950054
  • PIF/harbinger
  • To3
  • chr18:28103849-28103973
  • TTA
  • AGAGTGTGTTTAATAGTGATTCTAAAAAGTATTTTTATCATTTCTAATATTTAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT           A         C  AA    A      TC             -    TTTT
  AGAGTGTGTTT ATAGTGATT TA  AAGT TTTTTA  ATTTCTAATATTT AAAA    
  ||||||||||| ||||||||| ||  |||| ||||||  ||||||||||||| ||||     
  TCTTACACAAA TGTCATTAA AT  TTCA AAAAAT  TAAAGATTATGAA TTTT    
AT           C         A  CC    C      TA             C    TATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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