SE3950058

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3956
  • Vitis vinifera
  • SE3950058
  • PIF/harbinger
  • To3
  • chr6:1078996-1079120
  • TTA
  • AGAGTATGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT     AT    AATAATA   T        A    CAA                  ATTT
  AGAGT  GTTT       ATT TAGGAAGT TTTA   TATTTTTAATATTTGAAA    
  |||||  ||||       ||| |||||||| ||||   ||||||||||||||||||    T
  TCTCA  CAAA       TGA ATCCTTCA AAAT   ATAAAAATTATGAACTTT    
AT     CT    CCATCAC   T        C    ATC                  CTAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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