Plant MITE

SE3920060

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3958
Vitis vinifera
SE3920060
Mutator
M1
chrUn:42148868-42149104
ATCTTTTAA
GGGTTAATTTCATTAATTTCCCTTGAGGTTTTGGCTAAATACACCTAGCCCTCATTGGTTTGAAATTTCATCAAATACCTCCCTT

Secondary structure and sequence

TSD TIR

5'

3'

ATCTTTTAAA              A                       A    CC   C                T  CA               CCTTTCGTCATTTGTTGTTTTCA
          GGGTTAATTTCATT ATTTCCCTTGAGGTTTTGGCTAA TACA  TAG CCTCATTGGTTTGAAA TT  TCAAATACCTCCCTT                       
          |||||||||||||| ||||||||||||||||||||||| ||||  ||| |||||||||||||||| ||  |||||||||||||||                       C
          CCCAATTAAAGTGA TGGAGGGAACTCCAAAATCGATT ATGT  ATC GGGGTGATTAAACTTT AA  AGTTTATGGAGGGAA                       
AAATTTTCTA              G                       G    CA   A                T  AC               TAAAACTTAATCTCCCCTCCACT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3920060

ATCTTTTAAAGGGTTAATTTCATTAATTTCCCTTGAGGTTTTGGCTAAATACACCTAGCCCTCATTGGTTTGAAATTTCATCAAATACCTCCCTTCCTTTCGTCATTTGTTGTTTTCACTCACCTCCCCTCTAATTCAAAATAAGGGAGGTATTTGACAAATTTTCAAATTAGTGGGGACTAACTGTAGTTAGCTAAAACCTCAAGGGAGGTGAGTGAAATTAACCCATCTTTTAAA

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