SE3930062

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3960
  • Vitis vinifera
  • SE3930062
  • hAT
  • Hat5
  • chr6:6509318-6509770
  • ATTAGGAT
  • GATTAAGGGTCTC

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTAG     A       CAAAA   CC    CCC   TTA    ----------------T    CA   CC TTTATGGGCGGGCCGGGCCGCGGGCCTAAATTTAGGCCCAGCCCTTAGGCCCGCCCTTTTTAAAAAAAAACTACAAAAATAAAAAGTATTAAAAAAATATTCAATTAATAAGCATAAAAGGAATGTAGCTCAGTTGGTTAGAACCTTGAAATTTAAACATGAGGGGA
     GATTA GGGTCTC     AGC  GCGG   GCT   GGCC                 GGCT  AGC  G                                                                                                                                                                       
     ||||| |||||||     |||  ||||   |||   ||||                 ||||  |||  |                                                                                                                                                                        
     TTAAT CCCAGAG     TTG  CGCC   CGA   CCGG                 CCGG  GTT  G                                                                                                                                                                       
TAGGA     C       ----A   CC    ---   --C    CATTTATCCTCCAGACA    --   -- AGCCCGGCCCGGATACCCGGGCAACTGACCAGTTGCCCGGCCCGGTACGATTTTACGATCCGGGCACCCGATCGCCCGACCCGTCCGGCCCGGCCCGGCTGCCCGAAAAAATTTATTCGGTTTTACCGAAAGTTTTTTCCCTTCTCTCTCCCCCCCTAAGCTTGGGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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