SE3920064

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3962
  • Vitis vinifera
  • SE3920064
  • Mutator
  • M4
  • chr3:15800780-15801107
  • TTTTGACTT
  • AGAGTTAATTTTATTGAAACCCTTCGGGTTTAGTGTAAGTACATTAAGCCACCATAGATTTCAAATTTCATCAATTAGCACCTCTATAAATATATT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTTGACTT  A                     -C      A         C   AA      ATA   T                     -  C       A    ATATATATAAATTTT  T       TAATAAAATTTAGATTTTAGTGAATTGTTAAACACTCCT
         AG GTTAATTTTATTGAAACCCTT  GGGTTT GTGTAAGTA ATT  GCCACC   GAT TCAAATTTCATCAATTAGCAC CT TATAAAT TATT               AG TTTTAAA                                       
         || |||||||||||||||||||||  |||||| ||||||||| |||  ||||||   ||| ||||||||||||||||||||| || ||||||| ||||               || |||||||                                       A
         TC CAGTTAAAGTAACTTTGGGGG  TCCAAA CATATTTAT TGA  TGGTGG   CTA AGTTTAAAGTAGTTAATCGTG GA ATATTTA ATAA               AA TTTTTTT                                       
ATTCAGTTT  C                     AC      C         A   GC      CAA   T                     T  -       A    -----------GGCA  -       TAATAAAAAAATTCTCTAAAGTTTATTTTTATAAAATCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3