SE3950066

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3964
  • Vitis vinifera
  • SE3950066
  • PIF/harbinger
  • To1
  • chr18:28319368-28319699
  • TAA
  • AGGCTATGTTTGGTTCCCGGAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                       --    GAGGGAAAATGCGAGGGAAAGAAAATATAAAGGAAAAGTAGAAGGAAAGAAAAAATGAAGGAAAATAAAAAAATAGATTAAAAGTTGATAAATTATTTTTTTTGTTACTTCAAACTCATTTTATTTATTTTAACTC
  AGGCTATGTTTGGTTCCCGGAAA  ATTT                                                                                                                                        
  |||||||||||||||||||||||  ||||                                                                                                                                         
  TCCGATACAAACCAAGGGCCTTT  TGTT                                                                                                                                        
AA                       CA    TCCTTTCTTTTTTTTACGATTCCTTTTACTAAAAGAGTACAAACCAACAGGATACTTTTTATAGTTTCTTTTAGTTTATATTAATTTTGATTAATTTTTTAATACATAAAAATTTAATAAATTAGAAATATAACTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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