Plant MITE

SE3920069

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3967
Vitis vinifera
SE3920069
Mutator
M5
chr15:15324139-15324372
GTATTTTTA
AGGTTAATTTCATTTACTTCTCTCGGATTTCGATTAAATACATTTATTTTTTATAGATCTGAAATTTCAT

Secondary structure and sequence

TSD TIR

5'

3'

GTATTTTTA                 -    --CTC  A   C      A        T         A     A       --C     TTGCATTTATCTTTTTCATTTCTTATTTTC
         AGGTTAATTTCATTTAC TTCT     GG TTT GATTAA TACATTTA TTTTTATAG TCTGA ATTTCAT   AAATA                              
         ||||||||||||||||| ||||     || ||| |||||| |||||||| ||||||||| ||||| |||||||   |||||                              A
         TCCAATTAAAGTAAGTG AGGA     CC AAA CTGATT ATGTAAAT GAAAGTATC AGACT TAAAGTA   AGAGA                              
ATTTTTATG                 T    AAATT  -   A      -        T         C     C       ATA     AGGGAATAAAACTTACTCTCTTCTTTATTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3920069

GTATTTTTAAGGTTAATTTCATTTACTTCTCTCGGATTTCGATTAAATACATTTATTTTTTATAGATCTGAAATTTCATCAAATATTGCATTTATCTTTTTCATTTCTTATTTTCACTTATTTCTTCTCTCATTCAAAATAAGGGAAGAGAATAATGAAATCTCAGACCTATGAAAGTTAAATGTATTAGTCAAAACCTTAAAAGGATGTGAATGAAATTAACCTGTATTTTTA

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