SE3930078

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3976
  • Vitis vinifera
  • SE3930078
  • hAT
  • Hat8
  • chr8:15355521-15355994
  • TTTAGGAA
  • GAACTATG

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTAG        ---TT     GGTTTGGGTATGAGTATCAGATACAAGTATGTGTTTAGGTGTCTAATCCTTCACAACTCAAATTTTAGGATACAGAGATTCAGCTAAGAAGGATCCAAAAAAGAGGTATGGATACCGGGATACGACATGATAAAAGAAAACCCAATTAAAAATAAATTAGAAGGAAAGGTATTCTTTTTAAAAGCTCCCATCTTTTCCCTCTAATCCATTCTTTT
     GAACTATG     GCATG                                                                                                                                                                                                                       
     ||||||||     |||||                                                                                                                                                                                                                       T
     TTTGATAC     GCTTA                                                                                                                                                                                                                       
AAGGA        TATGG     GGAAGTTAAAGTGAGTTGTATGGGCACACCGATACGTACTGTACCCACACCCATACTCTAAGAACAGTCTATGAGGATAAAATGAAACTCACACCGATAAACTAAAAAAGTAACTATAGGAAAATAAGAAAATTGAAAAAATTATTATTAATATGATCTCTTTTTCTTCTCAATCGATTTTTCACTTATAAACATTCTTATAAATCCCTATCCTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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