SE3950080

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3978
  • Vitis vinifera
  • SE3950080
  • PIF/harbinger
  • To16
  • chr13:7782408-7782652
  • TAT
  • GAGTCCGTTTGGCAGTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TAT    C            ATTCTA  AAGCGTTTTTTGCCTAAAAACTGTTTTTGAAAAAAAATTAGGTGTTTGCTGAAATTTAAGAAACACTTAAAAATATGAAAAAATCACTTGTAATA
   GAGT CGTTTGGCAGTG      GG                                                                                               
   |||| ||||||||||||      ||                                                                                                
   CTCA GCAAACTGTCAC      TG                                                                                               
TAT    C            -AAAAA  TTCACAAAAATTACTTTCACAAAAAAAGATTTTCACAAAAATCCTCTTAATGGATAGTTCACAAAGAGGCTTTTTGTGATATTCACTAAAAAGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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