Plant MITE

SE3950081

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3979
Vitis vinifera
SE3950081
PIF/harbinger
To17
chr1:757081-757475
TTA
TAGGGTCTGTTTAGGAACTGTTTTCAAGAACAGTT

Secondary structure and sequence

TSD TIR

5'

3'

T        -    A  -         CA         TTC      CTAGAACAAAAAAATTGGAAAATACGTTTGACAACAATAAATTGTTTTCTGTTTTCTATTATCAAAAAACAGAAAACAGAGTATTTTTAAATAACATTTTTTAGTTGTTTTCACTTGTTTTTTGAAAGCTGTTTTATAATATAATTGTAAAAA
 TAGGGTCT GTTT GG AACTGTTTT  AGAACAGTT   TGTTTT                                                                                                                                                         
 |||||||| |||| || |||||||||  |||||||||   ||||||                                                                                                                                                         C
 ATTCCAGA CAAA CC TTGATAAAA  TTTTGTCAA   ATTTTT                                                                                                                                                         
         A    -  A         AA         --T      TATCAAAAATTATTGTTAAAAACTTTTGGCAAGAAACTACAAAAAATCTTGTTTTCAGGCAAACCCTTGGATTTTACAAAAATTGGATAAAAATTATTTATACAAAATTTTTATTAAAAATACGGGTGTTGAAATAAAAATTAGTAATATGTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3950081

TTAGGGTCTGTTTAGGAACTGTTTTCAAGAACAGTTTTCTGTTTTCTAGAACAAAAAAATTGGAAAATACGTTTGACAACAATAAATTGTTTTCTGTTTTCTATTATCAAAAAACAGAAAACAGAGTATTTTTAAATAACATTTTTTAGTTGTTTTCACTTGTTTTTTGAAAGCTGTTTTATAATATAATTGTAAAAACATGTATAATGATTAAAAATAAAGTTGTGGGCATAAAAATTATTTTTAAAACATATTTATTAAAAATAGGTTAAAAACATTTTAGGTTCCCAAACGGACTTTTGTTCTAAAAAACATCAAAGAACGGTTTTCAAAAATTGTTATTAAAAACTATTTTTTATAACTGTTTTAAAAAATAGTTACCAAACAAGACCTTA

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