SE3930082

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3980
  • Vitis vinifera
  • SE3930082
  • hAT
  • Hat9
  • chr3:7847011-7847555
  • CTTCCACC
  • TAGGGGTGGCAAAGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
CTTCCACC           AA    GATATGAT     AACG -   AC  -         GTTTTT  -  ATTTGGGTTTAGTATAAATGGGTTTAAGTCAAATTTGCGTCGATCTGCATACCCGTTTAATAAATAGGTCATTTTTGGGTCAACCTACATAACATGAATTTGACCCGAATTAACCCATTTAATAATCTCTCTATTAACCTAATTATATTTTTAACCCATATTTGATTCATTTTAAATTTATTTTTAAATAAATAGCTCAATTAAGTCAT
        TAGGGGTGGCA  GTTT        TTACC    T GAT  GA ACCCAATAC      CC CA                                                                                                                                                                                                                 
        |||||||||||  ||||        |||||    | |||  || |||||||||      || ||                                                                                                                                                                                                                 A
        ATCCCCACTGT  CAAG        ACCTA    G ACA  AA ACAGCACAG      TT CG                                                                                                                                                                                                                 
CCACCTTC           --    -TACAATC     ---- C   --  C         ------  T  GATCCATAAGATGATGTATCGAGTTGGGTTTGGGCTGTGTTTATTATTAGCACAGTTTTTGTATTTAGGTTTATAATGGATTAATAATTTATCCATTGTCCAGCACAGTGGGTAAATTGGGTAAATTATTAATCCAGAAGGATAAATTATTAGTACAACTCAATCCAGAACATATACAAATATACTAATTACAGGGTTGGTTTGTACAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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