Plant MITE

SE3950084

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3982
Vitis vinifera
SE3950084
PIF/harbinger
To1
chr17:9342708-9343032
TTA
AGGCTATGTTTGGTTCCCAGAAAATTCAAGGGAAAATGTGAGGGAAAAA

Secondary structure and sequence

TSD TIR

5'

3'

TT               CC A    --   C         T   -A        -   TAGAGAGGAAAAGTGGAAGAAAAGAAAAAATAAAAGAAAAAAAATTAGATTCAAAATCAATAAATTATTTTTATATGTTTCTTCAAATTCATTTCACTTAGTTTCC
  AGGCTATGTTTGGTT  C GAAA  ATT AAGGGAAAA GTG  GGGAAAAA ATA                                                                                                          
  |||||||||||||||  | ||||  ||| ||||||||| |||  |||||||| |||                                                                                                          T
  TCCGATACAAACCAA  G CTTT  TAA TTCTTTTTT TAC  TTCTTTTT CCA                                                                                                          
AT               AA C    CA   T         T   AA        A   AAAGAATATAAACCAAAGTGGTATTTAAAAAAATTTCTTTAAACTTATATTAAGTTTAATCAATCTTTAAATATATAAAATTTTAATAAATTAGAAATATATTTTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3950084

TTAGGCTATGTTTGGTTCCCAGAAAATTCAAGGGAAAATGTGAGGGAAAAAATATAGAGAGGAAAAGTGGAAGAAAAGAAAAAATAAAAGAAAAAAAATTAGATTCAAAATCAATAAATTATTTTTATATGTTTCTTCAAATTCATTTCACTTAGTTTCCTCTTTTATATAAAGATTAAATAATTTTAAAATATATAAATTTCTAACTAATTTGAATTATATTCAAATTTCTTTAAAAAAATTTATGGTGAAACCAAATATAAGAAAACCATTTTTCTTAACATTTTTTTTCTTTAATACTTTCCGAAAACCAAACATAGCCTTA

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