SE3950086

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3984
  • Vitis vinifera
  • SE3950086
  • PIF/harbinger
  • To1
  • chr4:7526159-7526501
  • TTA
  • AGGCTATATTTAGTTCTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT   C   A       C    AAAGTACTTAGAAACAAAAATATTAAAGAAAATTATTTTCTTATATTTGGTTTCATTATGAAAAATATCAAAGAAAATTAAATATAATTAAAATTAGTTAGAAATTTATGAATTTATGAATTATTTAATATTTATATAATCAAGAAAAA
  AGG TAT TTTAGTT TCGG                                                                                                                                                     
  ||| ||| ||||||| ||||                                                                                                                                                     T
  TCC ATA AAATCAA AGGT                                                                                                                                                     
AT   A   C       T    TTTTTATACTCCTTTTTACATTTTTTTTTTTTTTTCTTTTTTCTTTTTTCTTTATTTTTCTTTTTCATTTTCCTTTCTTTTTATTTTTTATTTTTTATTTAAATTTTCGTTATTTAATAAAAATATAGTAAAAATTTGAATAAAATGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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