Plant MITE

SE3950088

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3986
Vitis vinifera
SE3950088
PIF/harbinger
To1
chr9:17520891-17521222
TTA
AGGCTATGTTTGGTTCTC

Secondary structure and sequence

TSD TIR

5'

3'

TT   C              ATAAAATTTGAG         A          AATACAAAA       -A       ------------------  AAAAAGTGAAGGAAAATAAAAAATTGATTAAAAGTTGATACGTTATTTTTATTTTTTACTTCAAACTCATTTTATTTATTTTAACTCAT
  AGG TATGTTTGGTTCTC            GGAAAATGC AGGGAAAGAA         GAAAAAT  GAAGGAA                  GG                                                                                         
  ||| ||||||||||||||            ||||||||| ||||||||||         |||||||  |||||||                  ||                                                                                          
  TCC ATACAAACCAAGGG            CCTTTTATG TTCCTTTCTT         TTTTTTA  TTTCCTT                  CC                                                                                         
AT   A              ------------         A          ---------       CG       TTACAAAAAAAGTACAAA  AACAGGATACTTTTTATATTTTCTTTTAGTTTATATTAATTTTAATTAATTTTTGAATACATAAAATTTTAATAAATTAGAAATATAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3950088

TTAGGCTATGTTTGGTTCTCATAAAATTTGAGGGAAAATGCAAGGGAAAGAAAATACAAAAGAAAAATAGAAGGAAGGAAAAAGTGAAGGAAAATAAAAAATTGATTAAAAGTTGATACGTTATTTTTATTTTTTACTTCAAACTCATTTTATTTATTTTAACTCATTAATATAAAGATTAAATAATTTTAAAATACATAAGTTTTTAATTAATTTTAATTATATTTGATTTTCTTTTATATTTTTCATAGGACAACCAAACATGAAAAAAACATTTTCCTTTGCATTTTTTTTCTTTCCTTAGTATTTTCCGGGAACCAAACATAACCTTA

Copy Cancel