SE3950091

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3989
  • Vitis vinifera
  • SE3950091
  • PIF/harbinger
  • To1
  • chr9:4279368-4279699
  • TAA
  • AGGCTATGTTTGGTTCCCGGAAAGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                 C       ACAAA    --------     A       T        --------------       --------  C      GGTTGTCCTATGAAAAATATCAAAGAAAATCAAATATAATTAAAACTAATTAAAAACTTATGTATTTTTAAATTATT
  AGGCTATGTTTGGTTCC GGAAAGT     GGAA        AGAAA AAAATGC AAGGAAAA              TGATTTT        CT ATGTTT                                                                             
  ||||||||||||||||| |||||||     ||||        ||||| ||||||| ||||||||              |||||||        || ||||||                                                                             T
  TCCGATACAAACCAAGG TCTTTTA     CCTT        TCTTT TTTTATG TTCCTTTT              TTTCATT        TT TTTTTA                                                                             
AA                 A       AACTC    TTACGCTA     C       T        CATCTTCCTTTCTT       TCCTTTTA  -      TCTAATTTTCAACTATTTAATAAAAAAAACAATGAAGTTTGAGTAAAATAAATAAAATTGAGTAGTTATATTTCTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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