SE1920005

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4048
  • Lotus japonicus
  • SE1920005
  • Mutator
  • M2
  • CM0179:143175-143413
  • ATCTAACAA
  • GGAATTGACTCCT

Secondary structure and sequence

TSD    TIR
5'



3' 
ATCTAACAA   AT  A     CTAA     --             CA          --------A      CA      A         C   T TA    -----------    --CA     TTGC
         GGA  TG CTCCT    AGTGA  GAGTCACTTTAGA  GTAGAGTAAG         CATGAC  TTGATT AGAAATCAA TGT G  ATTT           TGAT    TATAC    
         |||  || |||||    |||||  |||||||||||||  ||||||||||         ||||||  |||||| ||||||||| ||| |  ||||           ||||    |||||     
         CCT  AC GAGGA    TCACT  CTTAGTGAAATCT  CATTTCATTC         GTGTTG  AACTAA TCTTTAGTT ACA C  TAAA           ACTA    ATATG    
AACAATCTA   AC  C     CAAC     CC             CC          GCTAGTCTA      TC      A         A   T TC    TTCCTTGTACT    AACA     TTCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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