Plant MITE

SE1950006

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4049
Lotus japonicus
SE1950006
PIF/harbinger
To2
LjT08P02:47736-48022
TTA
AGGCCCAGTTTGGAAGAGCTTATTTGAGC

Secondary structure and sequence

TSD TIR

5'

3'

TT      A         ---      T      TTATCT       ---         ATG   GTGTTTGGGAGAGCTTATGCAAACAGCTTATGGCCTGCCATAAGCTATTTTCAGCTTATTTTCATAAGCTACTCAGGACAGCTTAT
  AGGCCC GTTTGGAAG   AGCTTA TTGAGC      GGCAGCA   TAAGCTCTT   CCA                                                                                      
  |||||| |||||||||   |||||| ||||||      |||||||   |||||||||   |||                                                                                       
  TCCGGG CAAACCTTT   TCGAAT AATTCG      CGAATAC   TATTCGCGA   ATA                                                                                      
AT      G         TTG      T      ------       CAG         ---   CTATATTCGCGAATAAGTATTCGATAAAAATTTTTAAATAACTTTATTTAATTTTTATTCAACATATATTCGTATTCGACAAAAAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1950006

TTAGGCCCAGTTTGGAAGAGCTTATTTGAGCTTATCTGGCAGCATAAGCTCTTATGCCAGTGTTTGGGAGAGCTTATGCAAACAGCTTATGGCCTGCCATAAGCTATTTTCAGCTTATTTTCATAAGCTACTCAGGACAGCTTATGAAAAACAGCTTATGCTTATATACAACTTATTTTTAATTTATTTCAATAAATTTTTAAAAATAGCTTATGAATAAGCGCTTATATCATAAGCGCTTATGACCATAAGCGCTTAATTAAGCTGTTTTTCCAAACGGGGCCTTA

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