Plant MITE

SE1930008

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4051
Lotus japonicus
SE1930008
hAT
Hat4
CM1034:56980-57767
ACTACAGT
ACTACAGTTAGGGGTGGGAATAGGCTAG

Secondary structure and sequence

TSD TIR

5'

3'

   AC                       -----------    AG       TTGCTTAAATAGGCTTAGCCTGTTTAAAAATCTTAAGGCCTGAGCCTGGCCTATGGCCTATCAAAGGCTTTTTTTTCGAGCCTGGTCTGGGCCTTCCGAAAGCCTGGCTTGGCCTGGCAGCCTGTTTAAAGACCCGTTTCACAACAAGAGTTTTACGTTTGTTAATAAATTTATCTGTAAAGAAGTTATCAAACTTATAAGCTAACGGGTTAAATTATACTAAAATAATATTTTCAACAATCAGACTTATAATATTATCAGCTAATAGGTCGTGATGAAACTAAACGAGATTATGTTGGTTTCTTAGAGTTGAAGAGTCAATTTAAAATCACACGCCATATTAAGATA
ACT  AGTTAGGGGTGGGAATAGGCTAG           GCCT  GTAGGCT                                                                                                                                                                                                                                                                                                                                                            
|||  |||||||||||||||||||||||           ||||  |||||||                                                                                                                                                                                                                                                                                                                                                            T
TGA  TCAATCCCCACCCTTATCCGGTC           CCCG  GATACCG                                                                                                                                                                                                                                                                                                                                                            
   CA                       CAGCAAGCATC    --       GATCGGATGGTGTCCGGGTCCGGTCCGGTCTGGTTTAACCATTTATCGGTTCCGAATCCGAAAAACTTTTCGGATAAATCAATTTTTCCGGTCCGAGTCCGGTAAGTTGTTCGGAACATTCGGAATGTCCGATCGGATAAATTCATTTATACTAATCATAAAAAACCATTTAACATTTATACTATTCATATTTATATAAAATGGGAACTACTACAGATATATAATTTTTAAATATTATTATAGAACTATAATATATGAATAACTCTAAAATCATATAAATTCGTTTAACTGAATATATTGCTAAGTTTCAATATTCAGAAAAATTTTTATTTATATACTGCATAAATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1930008

ACTACAGTTAGGGGTGGGAATAGGCTAGGCCTAGGTAGGCTTTGCTTAAATAGGCTTAGCCTGTTTAAAAATCTTAAGGCCTGAGCCTGGCCTATGGCCTATCAAAGGCTTTTTTTTCGAGCCTGGTCTGGGCCTTCCGAAAGCCTGGCTTGGCCTGGCAGCCTGTTTAAAGACCCGTTTCACAACAAGAGTTTTACGTTTGTTAATAAATTTATCTGTAAAGAAGTTATCAAACTTATAAGCTAACGGGTTAAATTATACTAAAATAATATTTTCAACAATCAGACTTATAATATTATCAGCTAATAGGTCGTGATGAAACTAAACGAGATTATGTTGGTTTCTTAGAGTTGAAGAGTCAATTTAAAATCACACGCCATATTAAGATATTTAAATACGTCATATATTTATTTTTAAAAAGACTTATAACTTTGAATCGTTATATAAGTCAATTTGCTTAAATATACTAAAATCTCAATAAGTATATAATATCAAGATATTATTATAAATTTTTAATATATAGACATCATCAAGGGTAAAATATATTTATACTTATCATATTTACAATTTACCAAAAAATACTAATCATATTTACTTAAATAGGCTAGCCTGTAAGGCTTACAAGGCTTGTTGAATGGCCTGAGCCTGGCCTTTTTAACTAAATAGGCTTTTCAAAAAGCCTAAGCCTTGGCTATTTACCAATTTGGTCTGGCCTGGCCTGGGCCTGTGGTAGGCTAGGCCATAGGCCCCTACGAACGACCTGGCCTATTCCCACCCCTAACTACAGT

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