SE1910011

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4054
  • Lotus japonicus
  • SE1910011
  • Tc1/Mariner
  • St1
  • CM0210:155682-155971
  • TA
  • TACTCCCTCCGTCCCCATTTATAAGTCACTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
                  T              --A    ATTCTCTAGGATTAAGAAAAGATGTTGTTAGCATTAAATTTGTAAAAAGTTTTATTGAGTTTCCTAGATTACCCATCAGCTTCTCTCTCCAAATTAATTTCTTTTC
TACTCCCTCCGTCCCCAT TATAAGTCACTTTT   CCTA                                                                                                          
|||||||||||||||||| ||||||||||||||   ||||                                                                                                           
ATGAGGGAGGCAGGGGTA ATATTCAGTGAAAA   CTCA                                                                                                          
                  T              AAT    AAAAAATCAGGGTTATATATTCAGTGAAATATTATGGTTACTTCGTAAATTATGTAAAAAAGGTTTGAATGGGAGTATAAATTATACTTTCTCCATTACATCAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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