SE1920016

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4059
  • Lotus japonicus
  • SE1920016
  • Mutator
  • M3
  • CM0126:1810741-1810952
  • TAAAAAGAA
  • AGAGTTTAATGGGTATGCACTGTCAGTGTAAAACAGTTTTACACAGACAACCAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAAAAGA      T  T    A                 AC            A  A     CACAACA  C     AGAA      A  A    CACA    ATT
        AGAGTT AA GGGT TGCACTGTCAGTGTAAA  AGTTTTACACAG CA CCAAT       TG CACGT    GGAATA TA CTTT    TTAA   
        |||||| || |||| |||||||||||||||||  |||||||||||| || |||||       || |||||    |||||| || ||||    ||||   T
        TCTTAA TT CCTA ACGTGGCAGTCACATTT  TTAAAATGTGTC GT GGTTA       GC GTGTA    TTTTAT AT GAAA    AATT   
AAGAAAAA      T  C    C                 GT            A  A     ACTTAAG  A     -ATA      -  A    -CAA    AAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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