SE1920019

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4062
  • Lotus japonicus
  • SE1920019
  • Mutator
  • M4
  • LjT39G17:35300-35845
  • TTTGGAAAG
  • TTGGAAAGGCTTAATTGCACTTTTGGTCCCCAACTATTGCCTTCATGCGAAAATCGTCCTCAAACTTCAAAATTAGCAAAAAATGTCCTCCAACTATACAAGTCGTTGCACTTTTGGTCTGCCGTTTGCCTTATGTGAGAAAACTAACGTGAGAAGCTGATGTGGCTCCCTCGCGCGTGTCTCACATGACTTTCTTCAGAGAGCTTGATGAGTGGACAAGTCACATGCTTCTCACGTGACTCTAAAGGG

Secondary structure and sequence

TSD    TIR
5'



3'
T  G                            -             A                                            C          A         C                   TTA         A                                C         A   C                     G                                     AGTAATCAGG      TAG    TGCAA
 TT GAAAGGCTTAATTGCACTTTTGGTCCCC AACTATTGCCTTC TGCGAAAATCGTCCTCAAACTTCAAAATTAGCAAAAAATGTCCT CAACTATACA GTCGTTGCA TTTTGGTCTGCCGTTTGCC   TGTGAGAAA CTAACGTGAGAAGCTGATGTGGCTCCCTCGCG GTGTCTCAC TGA TTTCTTCAGAGAGCTTGATGA TGGACAAGTCACATGCTTCTCACGTGACTCTAAAGGG          TCTAAT   GGTT     
 || |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||   ||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||          ||||||   ||||     T
 AG TTTTCCGAATTAACGTGAAAACCAGGGG TTGATAACGGAAG ACGCTTTTAGCAGGGGTTTGAAGTTTTAATCGTTTTTTGCAGGA GTTGATATGT CAGCAACGT AAAACCAGACGGCAAACGG   GCACTCTTT GATTGCACTCTTCGACTACACCGAGGGAGTGC CACAGAGTG ACT AAAGAAGTCTCTCGAACTACT ACCTGTTCAGTGTACGAAGAGTGCACTGAGATTTTCC          AGGTTA   CCAA     
A  G                            G             G                                            A          A         T                   TAG         C                                A         C   A                     G                                     ---------G      ---    TACTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End