SE1960020

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4063
  • Lotus japonicus
  • SE1960020
  • Micron
  • Mim1
  • LjSGA_015615:903-1236
  • TATATAT
  • TATATATATATATATAGAGGATGTATCATGTGAGAAAGGTGTTCTTATGTGAGAACATGAGAATAAATCATGACCGTTAGATCTAATCATGAACGGTCCAGATTAAAACATTAAGTTATGTGAGTTTTTAAGAAAGTCATCATGACTTTTTTAAGTGATCATGTGAGCATTAAATTGTTTTAATCTGGACCGTTCATGACATGATCTAACGGTCATGATTTATTCTCATTTTCTCACATAAGAACATCTTTCTCATATGATACATCCCCTATATATATATATATA

Secondary structure and sequence

TSD    TIR
5'



3' 
                 A                                     C                           TAA                        --    - -        GTT             T
TATATATATATATATAG GGATGTATCATGTGAGAAAGGTGTTCTTATGTGAGAA ATGAGAATAAATCATGACCGTTAGATC   TCATGAACGGTCCAGATTAAAACA  TTAA G TTATGTGA   TTTAAGAAAGTCA 
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||   ||||||||||||||||||||||||  |||| | ||||||||   ||||||||||||| C
ATATATATATATATATC CCTACATAGTATACTCTTTCTACAAGAATACACTCTT TACTCTTATTTAGTACTGGCAATCTAG   AGTACTTGCCAGGTCTAATTTTGT  AATT C AGTGTACT   GAATTTTTTCAGT 
                 C                                     T                           TAC                        TA    A G        AGT             A
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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