Plant MITE

SE1920026

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4069
Lotus japonicus
SE1920026
Mutator
M9
CM0081:377300-377638
TATAATTTA
TAGGTTTAAATATCTTTTTAGTCCCAATAAAATAAAGTGAATTGGATTTGATTCCTCTAAACAAATTTCATAGCTTTTAGTCTCCAACA

Secondary structure and sequence

TSD TIR

5'

3'

TATAATT    T        C           A        -AA                         --C        T            C     TTAATGA          A     G  CGGT    ----      TCTTTTTAAACCGCCACTAAAACCAAGAATA  CGGTAAAATTGCCGC
       TAGG TTAAATAT TTTTTAGTCCC ATAAAATA   GTGAATTGGATTTGATTCCTCTAAA   AAATTTCA AGCTTTTAGTCT CAACA       AATGAGTGAA TTAGT CT    TCAT    TTTGTG                               AG               
       |||| |||||||| ||||||||||| ||||||||   |||||||||||||||||||||||||   |||||||| |||||||||||| |||||       |||||||||| ||||| ||    ||||    ||||||                               ||                
       ATCC AATTTATA AAAAATCAGGG TATTTTAT   CACTTGACTTAAACTAAGGAGGTTT   TTTAAAGT TCGAAAATCAGG GTTGT       TTATTCACTT AATCA GA    AGTA    AAACAC                               CG               
 TTTAAT    C        C           A        CCC                         TTT        T            A     --TAATG          C     -  -AAT    TGAA      -------------------------------  CCCAAAGTACGTAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1920026

TATAATTTAGGTTTAAATATCTTTTTAGTCCCAATAAAATAAAGTGAATTGGATTTGATTCCTCTAAACAAATTTCATAGCTTTTAGTCTCCAACATTAATGAAATGAGTGAAATTAGTGCTCGGTTCATTTTGTGTCTTTTTAAACCGCCACTAAAACCAAGAATAAGCGGTAAAATTGCCGCTAATGCATGAAACCCGCCACAAAAAGTATGATAAAGACTAACTTCACTTATTGTAATTGTTGAGGACTAAAAGCTTTGAAATTTTTTTTTGGAGGAATCAAATTCAGTTCACCCCTATTTTATAGGGACTAAAAACATATTTAACCCTATAATTT

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