SE1910027

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4070
  • Lotus japonicus
  • SE1910027
  • Tc1/Mariner
  • St4
  • LjSGA_023635:922-1222
  • TA
  • TACTCCCTCCGTCCCTAATTATAAGCTAAAGTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
                                  -   AAATCACGCTTATTAAGAAAGTCTTAATTGATGTATTGGTTTTTAAAAAAATGGTACAATCTTTCATATTTACCCCTATTTAAGTGGTTTGTAGTAGGAGGAAAGAGAATAAA
TACTCCCTCCGTCCCTAATTATAAGCTAAAGTTG TAA                                                                                                                 
|||||||||||||||||||||||||||||||||| |||                                                                                                                  
ATGAGGGAGGCAGGGATTAATATTCGATTTCAAC CTG                                                                                                                 
                                  T   AATACAAAACAGTGATTTATATTCGATTTCAACATTTTCGATTATAAAGAAAGGTATAAATGGGAACGTAAATAACCAAAAAATTAAGGTTGTAAAACTTTAATTTTGGGTGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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