SE1930030

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4073
  • Lotus japonicus
  • SE1930030
  • hAT
  • Hat3
  • CM0788:26591-27235
  • GGTGTAAG
  • CATAGTTTTAAAACTC

Secondary structure and sequence

TSD    TIR
5'



3' 
GGTGTAAG  TA            G       -  --  --   GT  --G     --   AACCAGGACTCGGTGGTGTGGCCGGTCCGAGCGAGTAGTTCGACCGGAAATGCACAGAACCGGACTAAACCGGTATGACTCGACCGGGTTGACCATAAAACCGGTGACTCGGCCGGTTCTCGATTGAACCGGTGAGTCACCCAATAATCTGTTTCCTTGCATTTATTTTAATAAAAAAAGTGCTCCAGGGAAGGCTCGAACACAGAACGTGTACGTGACACACGGGAAGCTTACCATTACGCTATAGAGAACTTTGCTACATATACT
        CA  GTTTTAAAACTC GCTCGGA CC  GG  CCG  CC   ACCGG  TTC                                                                                                                                                                                                                                                                           
        ||  |||||||||||| ||||||| ||  ||  |||  ||   |||||  |||                                                                                                                                                                                                                                                                           G
        GT  CAAAATTTTGAG CCGAGCT GT  CT  GCC  AG   CGTTA  CAG                                                                                                                                                                                                                                                                           
GAATGTGG  CA            -       A  AG  AA   --  CCC     CT   TTACTCAGTGACCAGTTTGGTCACTCAGTAACTCGCCTAACGAATTGAGCCAAATATAATTTTTATAATTTTTTTATCTTTATGATGGATTCTAACTAACTATTGAACCATAAAGTTTAAATTTTAGTGATCCTCGATCACAAAATTCGTAATGATTTGATTTCAAAGAAATTAATTAATTAACAACATAAGTGAACGTTAAACGTTTGTAAAATTATATATTAAGCAAAAACAACAAATACATAAGTAATATATATGTAAAGGTAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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