SE1950032

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4075
  • Lotus japonicus
  • SE1950032
  • PIF/harbinger
  • To4
  • LjT09A11:1372-1773
  • AAG
  • AGGGGGCGTTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
A            TTACAAGTTTTACAAAAAT   CTCAGGAATGTTGTTTCCCAAGAATCTCATTACCAACAAAGTCATTCCCGGGTAAAATGAAAAATGTGTTTGGTTAGTGTACGTTATTCCCGGGAATGTTTTTCAAAATCATTTAATAGAAAAAATAGAAAACAAGTAGTGGAAGAGAGAGTTAGTGGAAAATAACTTCCATTC
 AGGGGGCGTTTG                   ATT                                                                                                                                                                              
 ||||||||||||                   |||                                                                                                                                                                               
 TCCCCCGCAAAC                   CTA                                                                                                                                                                              
A            ----------------CAT   TCCGTAGTGTTTTATAAGGGCCCTTACACTCCAACCCTTTCATTGTAAGAGTACAAACCATCTTCAAATGTAAAAAAATAAGGGCCCATACTTTGTAAGGGTCCATTTATTTAATGTGTACTTAAAAATTTAGAGTAAGAGTAGAGTTTCTTCCCCTTAGAATGTAAGAGTACC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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