SE1930037

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4080
  • Lotus japonicus
  • SE1930037
  • hAT
  • Hat6
  • CM0310:6057-6260
  • AAGATGGC
  • CAGTGTTGTCAAATCGCG

Secondary structure and sequence

TSD    TIR
5'



3' 
AAGATGGC              C   ATCGC  AC      AGATTCGCAGTGAGCCAAAAATCCGCTATTTTGGCCACTATTTAGCCGTGAATAGCGGGAATAG
        CAGTGTTGTCAAAT GCG     GG  CATTGC                                                                
        |||||||||||||| |||     ||  ||||||                                                                 
        GTCACAATAGTTTA CGC     CG  TATCGC                                                                
CGGTAGAA              T   -----  -A      CGCGGGCGATATCGCATCACCTAAAAACCGATTAGCGTTGCGGCGATAACGGGTGATATCGCGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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