Plant MITE

SE1930038

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4081
Lotus japonicus
SE1930038
hAT
Hat13
LjT03K24:80338-80973
ATCATACA
CTATGTTGCACGGGTAC

Secondary structure and sequence

TSD TIR

5'

3'

ATCATACA                 --    AAATTGGCAGAGTACCCGTACCGGGTACGTACCCGGTACGGGTACGCAGTGGGTACGCCGTGGGTACGTACCTGGTACATACCTGGTACATACCCAAAAGCATCGCCAAACAAAAAAAACCGGGTACGGCGTGGGTACGTTTTGGGTACTCCGTGAGTACGTTCTGGGTACATCGAGGGTACGCCGGATAAGTTTTTTTTTTTTAAATGAAAAATGTTCAAAACTATGTCGTTTTGTAGTTTTTTATGTAATTTTAAAAATTAAAAAATTTATTCTCAATTTATTCAA
        CTATGTTGCACGGGTAC  GCCA                                                                                                                                                                                                                                                                                                
        |||||||||||||||||  ||||                                                                                                                                                                                                                                                                                                 
        GATACAACGTGCCTATG  CATG                                                                                                                                                                                                                                                                                                
ACATACTA                 CC    CCATGGCCATGGCCATGCCCATGCCCCATGCGGTAAAAAACTTTTTTGTCCCATGCCCATGCGGCCAATATATGTTATAATAATTAATTCTTATAGTTTAGAGAATTACATGTTATGAGCATAAAAAACCGATTATGAGTATCGTTTCTGGTTGTACTTTCAGTAGTGTCTTGCCACCTAAGTTACCACCGTACTACCCCCCTTCTTCTTGCACTAGCTGAGAGAGAGAAGTAAGAAGTATCGTCAGCATACAATCTTTCTTACTTTCCATTTAATCCAAAACCAGCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1930038

ATCATACACTATGTTGCACGGGTACGCCAAAATTGGCAGAGTACCCGTACCGGGTACGTACCCGGTACGGGTACGCAGTGGGTACGCCGTGGGTACGTACCTGGTACATACCTGGTACATACCCAAAAGCATCGCCAAACAAAAAAAACCGGGTACGGCGTGGGTACGTTTTGGGTACTCCGTGAGTACGTTCTGGGTACATCGAGGGTACGCCGGATAAGTTTTTTTTTTTTAAATGAAAAATGTTCAAAACTATGTCGTTTTGTAGTTTTTTATGTAATTTTAAAAATTAAAAAATTTATTCTCAATTTATTCAAACGACCAAAACCTAATTTACCTTTCATTCTTTCTAACATACGACTGCTATGAAGAATGAAGAGAGAGAGTCGATCACGTTCTTCTTCCCCCCATCATGCCACCATTGAATCCACCGTTCTGTGATGACTTTCATGTTGGTCTTTGCTATGAGTATTAGCCAAAAAATACGAGTATTGTACATTAAGAGATTTGATATTCTTAATTAATAATATTGTATATAACCGGCGTACCCGTACCCTGTTTTTTCAAAAAATGGCGTACCCCGTACCCGTACCGGTACCGGTACCGTACCCGTATCCGTGCAACATAGATCATACA

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