SE1930040

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4083
  • Lotus japonicus
  • SE1930040
  • hAT
  • Hat14
  • LjSGA_144368:461-640
  • CAAATTAG
  • AATTAGCAGTGTTGTTAATTGCGGATGGCGGATCATGGCGG

Secondary structure and sequence

TSD    TIR
5'



3' 
CA    A             ----    GG       ---A         --AAA    AAATCCCGCCATACATGACAAATAATGGCGGAATAT
  AATT GCAGTGTTGTTAA    TTGC  ATGGCGG    TCATGGCGG     GCTG                                    
  |||| |||||||||||||    ||||  |||||||    |||||||||     ||||                                     
  TTAA CGTCACAATAGTT    GGCG  TACCGTC    AGTACCGCC     ACCG                                    
GA    A             TATA    -G       AAAG         AAAAA    AAAGACGGTACCGGCTATAGGGTGGTATACCGGCGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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